.. _calibration_tools:

Calibration tools
=================

Typically, users are expected to use PEtab Select via a calibration tool. Hence, we recommend
reading the model selection documentation page for the chosen calibration tool.

Listed below are the supported calibration tools. If you want to use an alternative calibration
tool, then see :doc:`examples/other_model_types` for an example of that.


BasiCO (COPASI)
---------------

.. image:: https://raw.githubusercontent.com/copasi/basico/refs/heads/master/docs/_static/COPASI_Conly_176x176.png
   :alt: COPASI logo
   :height: 80px
   :target: https://basico.readthedocs.io/

`BasiCO <https://basico.readthedocs.io/>`__ is a Python-based tool that is an interface to
`COPASI <https://copasi.org/>`__.

- `Documentation <https://basico.readthedocs.io/>`__
- `Model selection guide <https://basico.readthedocs.io/en/latest/notebooks/Working_with_PEtab.html#Model-Selection>`__
- `SBML support <https://sbml.bioquant.uni-heidelberg.de/Submission/Details/62>`__ (via COPASI)

Data2Dynamics
-------------

`Data2Dynamics <https://github.com/Data2Dynamics/d2d>`__ is a MATLAB-based tool.

- `Documentation <https://github.com/Data2Dynamics/d2d>`__
- `Model selection guide <https://github.com/Data2Dynamics/d2d/wiki/Model-selection-with-PEtab-Select>`__

PEtab.jl
--------

.. image:: https://raw.githubusercontent.com/sebapersson/PEtab.jl/main/docs/src/assets/logo_light.png
   :alt: PEtab.jl logo
   :height: 80px
   :target: https://sebapersson.github.io/PEtab.jl

`PEtab.jl <https://sebapersson.github.io/PEtab.jl>`__ is a Julia-based tool.

- `Documentation <https://sebapersson.github.io/PEtab.jl>`__
- `Model selection guide <https://sebapersson.github.io/PEtab.jl/stable/pest_select/>`__
- `SBML support <https://sebapersson.github.io/SBMLImporter.jl/stable/support>`__

pyPESTO
-------

.. image:: https://raw.githubusercontent.com/ICB-DCM/pyPESTO/main/doc/logo/logo.png
   :alt: pyPESTO logo
   :height: 80px
   :target: https://pypesto.readthedocs.io/

`pyPESTO <https://pypesto.readthedocs.io/>`__ is a Python-based tool.

- `Documentation <https://pypesto.readthedocs.io/>`__
- `Model selection guide <https://pypesto.readthedocs.io/en/latest/example/model_selection.html>`__
- `SBML support <https://sbml.bioquant.uni-heidelberg.de/Submission/Details/71>`__ (via AMICI)