Index

_

__init__() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.constants.Criterion method) (petab_select.constants.Method method) (petab_select.criteria.CriterionComputer method) (petab_select.Criterion method) (petab_select.CriterionComputer method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.handlers.LimitHandler method) (petab_select.LateralCandidateSpace method) (petab_select.Method method) (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.model_space.ModelSpace method) (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.ModelSpace method) (petab_select.ModelSubspace method) (petab_select.plot.PlotData method) (petab_select.Problem method) (petab_select.problem.Problem method)

A

accept() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

AIC (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute) AICC (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute) append() (petab_select.Models method) augment_labels() (petab_select.plot.PlotData method)

B

BACKWARD (petab_select.constants.Method attribute) (petab_select.Method attribute) BackwardCandidateSpace (class in petab_select) (class in petab_select.candidate_space) bar_criterion_vs_models() (in module petab_select.plot)

BIC (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute) BRUTE_FORCE (petab_select.constants.Method attribute) (petab_select.Method attribute) BruteForceCandidateSpace (class in petab_select) (class in petab_select.candidate_space)

C

calculate_aic() (in module petab_select) (in module petab_select.criteria) calculate_aicc() (in module petab_select) (in module petab_select.criteria) calculate_bic() (in module petab_select) (in module petab_select.criteria) calibrated_models (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) can_estimate (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) can_estimate_all (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) can_fix (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) can_fix_all (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) candidate_space_arguments (petab_select.Problem attribute) (petab_select.problem.Problem attribute) CandidateSpace (class in petab_select) (class in petab_select.candidate_space) check_compatibility_stepwise_method() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) check_critical() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) check_swap() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) clear() (petab_select.Models method) colors (petab_select.plot.PlotData attribute) compute_criterion() (petab_select.Model method) (petab_select.model.Model method) compute_weights() (in module petab_select) (in module petab_select.analyze) consecutive_laterals (petab_select.candidate_space.FamosCandidateSpace attribute) (petab_select.FamosCandidateSpace attribute)

consider() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) copy() (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method) count() (petab_select.Models method) criteria (petab_select.Model attribute) (petab_select.model.Model attribute) Criterion (class in petab_select) (class in petab_select.constants) criterion (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) (petab_select.plot.PlotData attribute) (petab_select.Problem attribute) (petab_select.problem.Problem attribute) CriterionComputer (class in petab_select) (class in petab_select.criteria) critical_parameter_sets (petab_select.candidate_space.FamosCandidateSpace attribute) (petab_select.FamosCandidateSpace attribute) current (petab_select.handlers.LimitHandler attribute)

D

default_compare() (in module petab_select) (in module petab_select.model) DEFAULT_NODE_COLOR (in module petab_select.plot) df (petab_select.Models property) direction (petab_select.candidate_space.ForwardCandidateSpace attribute) (petab_select.ForwardCandidateSpace attribute) distance() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

distances (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) distances_in_estimated_parameters() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

E

end_iteration() (in module petab_select) (in module petab_select.ui) estimated_parameters (petab_select.Model attribute) (petab_select.model.Model attribute) exclude_model() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) exclude_model_hash() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) exclude_model_hashes() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) (petab_select.Problem method) (petab_select.problem.Problem method) exclude_models() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) (petab_select.Problem method) (petab_select.problem.Problem method) excluded() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method)

excluded_hashes (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) exclusions (petab_select.model_space.ModelSpace attribute) (petab_select.model_subspace.ModelSubspace attribute) (petab_select.ModelSpace attribute) (petab_select.ModelSubspace attribute) extend() (petab_select.Models method)

F

FAMOS (petab_select.constants.Method attribute) (petab_select.Method attribute) FamosCandidateSpace (class in petab_select) (class in petab_select.candidate_space) format_version (petab_select.Problem attribute) (petab_select.problem.Problem attribute) FORWARD (petab_select.constants.Method attribute) (petab_select.Method attribute)

ForwardCandidateSpace (class in petab_select) (class in petab_select.candidate_space) from_definition() (petab_select.model_subspace.ModelSubspace static method) (petab_select.ModelSubspace static method) from_yaml() (petab_select.Model static method) (petab_select.model.Model static method) (petab_select.Models static method) (petab_select.Problem static method) (petab_select.problem.Problem static method)

G

get_aic() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_aicc() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_best() (in module petab_select) (in module petab_select.ui) (petab_select.Problem method) (petab_select.problem.Problem method) get_best_by_iteration() (in module petab_select) (in module petab_select.analyze) get_bic() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_criterion() (petab_select.Model method) (petab_select.model.Model method) (petab_select.Models method) get_default_labels() (petab_select.plot.PlotData method) get_estimated() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) get_estimated_parameter_ids() (petab_select.Model method) (petab_select.model.Model method) get_excluded_hashes() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) get_graph() (in module petab_select) (in module petab_select.analyze) get_hash() (petab_select.Model method) (petab_select.model.Model method) get_iteration_calibrated_models() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) get_lh() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_limit() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.handlers.LimitHandler method) (petab_select.LateralCandidateSpace method)

get_llh() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_model() (petab_select.model.ModelHash method) (petab_select.ModelHash method) get_models() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) get_most_distant() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) get_n_estimated() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_n_measurements() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_n_priors() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_nllh() (petab_select.criteria.CriterionComputer method) (petab_select.CriterionComputer method) get_parameter_changes() (in module petab_select) (in module petab_select.analyze) get_parameter_values() (petab_select.Model method) (petab_select.model.Model method) get_petab_parameters() (in module petab_select.petab) get_predecessor_model() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) governing_method (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) graph_history() (in module petab_select.plot) graph_iteration_layers() (in module petab_select.plot) group_by_iteration() (in module petab_select) (in module petab_select.analyze) group_by_predecessor_model() (in module petab_select) (in module petab_select.analyze)

H

has_criterion() (petab_select.Model method) (petab_select.model.Model method) hash (petab_select.Model property) (petab_select.model.Model property)

hash_model_subspace_indices() (petab_select.model.ModelHash static method) (petab_select.ModelHash static method)

I

index() (petab_select.Models method) indices_to_model() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) indices_to_parameters() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) INITIAL_MODEL_METHODS (in module petab_select.constants) insert() (petab_select.Models method) insert_model_into_best_models() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) is_plausible() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

iteration (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) (petab_select.Model attribute) (petab_select.model.Model attribute)

J

jump_to_most_distant() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method)

K

kwargs_from_str() (petab_select.model.ModelHash static method) (petab_select.ModelHash static method)

L

LABEL_FONTSIZE (in module petab_select.plot) labels (petab_select.plot.PlotData attribute) LATERAL (petab_select.constants.Method attribute) (petab_select.Method attribute) LateralCandidateSpace (class in petab_select) (class in petab_select.candidate_space) latest_iteration_calibrated_models (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) LH (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute)

limit (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) (petab_select.handlers.LimitHandler attribute) LimitHandler (class in petab_select.handlers) line_best_by_iteration() (in module petab_select.plot) lint() (petab_select.Models method) LLH (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute) load() (petab_select.model_space.ModelSpace static method) (petab_select.ModelSpace static method)

M

max_steps (petab_select.candidate_space.ForwardCandidateSpace attribute) (petab_select.ForwardCandidateSpace attribute) Method (class in petab_select) (class in petab_select.constants) method (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) (petab_select.Problem attribute) (petab_select.problem.Problem attribute) method_scheme (petab_select.candidate_space.FamosCandidateSpace attribute) (petab_select.FamosCandidateSpace attribute) Model (class in petab_select) (class in petab_select.model) model_config (petab_select.Model attribute) (petab_select.model.Model attribute) (petab_select.model.ModelHash attribute) (petab_select.ModelHash attribute) (petab_select.Models attribute) (petab_select.Problem attribute) (petab_select.problem.Problem attribute) model_construct() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_copy() (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method) model_dump() (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method) model_dump_json() (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method) model_extra (petab_select.Model property) (petab_select.model.Model property) (petab_select.model.ModelHash property) (petab_select.ModelHash property) (petab_select.Models property) (petab_select.Problem property) (petab_select.problem.Problem property) model_fields_set (petab_select.Model property) (petab_select.model.Model property) (petab_select.model.ModelHash property) (petab_select.ModelHash property) (petab_select.Models property) (petab_select.Problem property) (petab_select.problem.Problem property) model_hash (petab_select.Model attribute) (petab_select.model.Model attribute) model_hash_to_model() (petab_select.Problem method) (petab_select.problem.Problem method) model_id (petab_select.Model attribute) (petab_select.model.Model attribute) model_json_schema() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_label (petab_select.Model attribute) (petab_select.model.Model attribute) model_parametrized_name() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_post_init() (petab_select.Model method) (petab_select.model.Model method) (petab_select.model.ModelHash method) (petab_select.ModelHash method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method)

model_rebuild() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_space_files (petab_select.Problem attribute) (petab_select.problem.Problem attribute) model_subspace_id (petab_select.Model attribute) (petab_select.model.Model attribute) (petab_select.model.ModelHash attribute) (petab_select.model_subspace.ModelSubspace attribute) (petab_select.ModelHash attribute) (petab_select.ModelSubspace attribute) model_subspace_indices (petab_select.Model attribute) (petab_select.model.Model attribute) model_subspace_indices_hash (petab_select.model.ModelHash attribute) (petab_select.ModelHash attribute) model_subspace_petab_yaml (petab_select.Model attribute) (petab_select.model.Model attribute) model_subspaces (petab_select.model_space.ModelSpace attribute) (petab_select.ModelSpace attribute) model_to_petab() (in module petab_select) (in module petab_select.ui) model_validate() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_validate_json() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) model_validate_strings() (petab_select.Model class method) (petab_select.model.Model class method) (petab_select.model.ModelHash class method) (petab_select.ModelHash class method) (petab_select.Models class method) (petab_select.Problem class method) (petab_select.problem.Problem class method) ModelHash (class in petab_select) (class in petab_select.model) Models (class in petab_select) models (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) (petab_select.plot.PlotData attribute) models_from_yaml_list() (in module petab_select) models_to_petab() (in module petab_select) (in module petab_select.ui) models_to_yaml_list() (in module petab_select) ModelSpace (class in petab_select) (class in petab_select.model_space) ModelSubspace (class in petab_select) (class in petab_select.model_subspace) module petab_select petab_select.analyze petab_select.candidate_space petab_select.constants petab_select.criteria petab_select.handlers petab_select.misc petab_select.model petab_select.model_space petab_select.model_subspace petab_select.petab petab_select.plot petab_select.problem petab_select.ui MOST_DISTANT (petab_select.constants.Method attribute) (petab_select.Method attribute) must_estimate (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) must_estimate_all (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) must_fix (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) must_fix_all (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property)

N

n_accepted() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

n_reattempts (petab_select.candidate_space.FamosCandidateSpace attribute) (petab_select.FamosCandidateSpace attribute) new_candidate_space() (petab_select.Problem method) (petab_select.problem.Problem method) NLLH (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute)

P

parameter_labels (petab_select.plot.PlotData attribute) parameter_string_to_value() (in module petab_select) (in module petab_select.misc) parameters (petab_select.Model attribute) (petab_select.model.Model attribute) (petab_select.model_subspace.ModelSubspace attribute) (petab_select.ModelSubspace attribute) parameters_all (petab_select.model_subspace.ModelSubspace property) (petab_select.ModelSubspace property) parameters_to_indices() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) parameters_to_model() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) petab_problem (petab_select.criteria.CriterionComputer property) (petab_select.CriterionComputer property) petab_select module petab_select.analyze module petab_select.candidate_space module petab_select.constants module petab_select.criteria module petab_select.handlers module

petab_select.misc module petab_select.model module petab_select.model_space module petab_select.model_subspace module petab_select.petab module petab_select.plot module petab_select.problem module petab_select.ui module petab_yaml (petab_select.model_subspace.ModelSubspace attribute) (petab_select.ModelSubspace attribute) PlotData (class in petab_select.plot) pop() (petab_select.Models method) predecessor_model (petab_select.candidate_space.CandidateSpace attribute), [1] (petab_select.CandidateSpace attribute), [1] predecessor_model_hash (petab_select.Model attribute) (petab_select.model.Model attribute) previous_predecessor_model (petab_select.candidate_space.CandidateSpace attribute), [1] (petab_select.CandidateSpace attribute), [1] Problem (class in petab_select) (class in petab_select.problem)

R

reached() (petab_select.handlers.LimitHandler method) read_arguments_from_yaml_dict() (petab_select.BackwardCandidateSpace class method) (petab_select.BruteForceCandidateSpace class method) (petab_select.candidate_space.BackwardCandidateSpace class method) (petab_select.candidate_space.BruteForceCandidateSpace class method) (petab_select.candidate_space.CandidateSpace class method) (petab_select.candidate_space.FamosCandidateSpace class method) (petab_select.candidate_space.ForwardCandidateSpace class method) (petab_select.candidate_space.LateralCandidateSpace class method) (petab_select.CandidateSpace class method) (petab_select.FamosCandidateSpace class method) (petab_select.ForwardCandidateSpace class method) (petab_select.LateralCandidateSpace class method) relative_criterion (petab_select.plot.PlotData attribute) remove() (petab_select.Models method) reset() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

reset_accepted() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) reset_exclusions() (petab_select.model_space.ModelSpace method) (petab_select.ModelSpace method) resolve_paths() (petab_select.Model method) (petab_select.model.Model method) retry_model_space_search_if_no_models (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) reverse() (petab_select.Models method) root (petab_select.Models attribute)

S

save() (petab_select.model_space.ModelSpace method) (petab_select.ModelSpace method) (petab_select.Problem method) (petab_select.problem.Problem method) scatter_criterion_vs_n_estimated() (in module petab_select.plot) search() (petab_select.model_space.ModelSpace method) (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSpace method) (petab_select.ModelSubspace method) send_model_to_candidate_space() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) set_criterion() (petab_select.Model method) (petab_select.model.Model method) set_estimated_parameters() (petab_select.Model method) (petab_select.model.Model method) set_excluded_hashes() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) set_iteration_user_calibrated_models() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) set_limit() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.handlers.LimitHandler method) (petab_select.LateralCandidateSpace method)

set_predecessor_model() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method) set_problem() (petab_select.Models method) set_relative_paths() (petab_select.Model method) (petab_select.model.Model method) SSR (petab_select.constants.Criterion attribute) (petab_select.Criterion attribute) start_iteration() (in module petab_select) (in module petab_select.ui) STEPWISE_METHODS (in module petab_select.constants) summary_tsv (petab_select.candidate_space.CandidateSpace attribute) (petab_select.CandidateSpace attribute) swap_parameter_sets (petab_select.candidate_space.FamosCandidateSpace attribute) (petab_select.FamosCandidateSpace attribute) switch_inner_candidate_space() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) switch_method() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method)

T

TICK_LABEL_FONTSIZE (in module petab_select.plot) to_definition() (petab_select.model_subspace.ModelSubspace method) (petab_select.ModelSubspace method) to_petab() (petab_select.Model method) (petab_select.model.Model method)

to_yaml() (petab_select.Model method) (petab_select.model.Model method) (petab_select.Models method) (petab_select.Problem method) (petab_select.problem.Problem method)

U

unhash_model_subspace_indices() (petab_select.model.ModelHash method) (petab_select.ModelHash method) update_after_calibration() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

update_from_iteration_calibrated_models() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) update_method() (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.FamosCandidateSpace method) upset() (in module petab_select.plot)

V

values() (petab_select.Models method)

VIRTUAL_INITIAL_MODEL_METHODS (in module petab_select.constants)

W

wrap_search_subspaces() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)

write_summary_tsv() (petab_select.BackwardCandidateSpace method) (petab_select.BruteForceCandidateSpace method) (petab_select.candidate_space.BackwardCandidateSpace method) (petab_select.candidate_space.BruteForceCandidateSpace method) (petab_select.candidate_space.CandidateSpace method) (petab_select.candidate_space.FamosCandidateSpace method) (petab_select.candidate_space.ForwardCandidateSpace method) (petab_select.candidate_space.LateralCandidateSpace method) (petab_select.CandidateSpace method) (petab_select.FamosCandidateSpace method) (petab_select.ForwardCandidateSpace method) (petab_select.LateralCandidateSpace method)