Calibration tools

Typically, users are expected to use PEtab Select via a calibration tool. Hence, we recommend reading the model selection documentation page for the chosen calibration tool.

Listed below are the supported calibration tools. If you want to use an alternative calibration tool, then see Model selection with non-SBML models and unsupported calibration tools for an example of that.

BasiCO (COPASI)

BasiCO is a Python-based tool that is an interface to COPASI.

• Documentation

• Model selection guide

• SBML support (via COPASI)

Data2Dynamics

Data2Dynamics is a MATLAB-based tool.

• Documentation

• Model selection guide

PEtab.jl

PEtab.jl is a Julia-based tool.

• Documentation

• Model selection guide

• SBML support

pyPESTO

pyPESTO is a Python-based tool.

• Documentation

• Model selection guide

• SBML support (via AMICI)